| option, or full option | description |
|---|
| -h , --help | show this help message and exit
|
| -n STEM , --namestem=STEM |
Name of the files up the digits part, eg mydata in
mydata0000.edf
|
| -F FORMAT, --format=FORMAT |
Image File format, eg edf or bruker
|
| -f FIRST, --first=FIRST | Number of first file to process, default=0
|
| -l LAST, --last=LAST | Number of last file to process
|
| -o OUTFILE, --outfile=OUTFILE |
Output filename, gets extension .spt
|
| -d DARK, --darkfile=DARK |
Dark current filename, to be subtracted, default=None
|
| -D DARKOFFSET, --darkfileoffset=DARKOFFSET |
Constant to subtract from dark to avoid overflows,
default=100
|
| -s SPLINE, --splinefile=SPLINE |
Spline file for spatial distortion,
default=/data/opid11/inhouse/Frelon2K/spatial2k.spline |
| -p PERFECT, --perfect_images=PERFECT |
Ignore spline Y|N, default=N
|
| -O FLOOD, --flood=FLOOD |
Flood file, default=None
|
| -t THRESHOLDS, --threshold=THRESHOLDS |
Threshold level, you can have several
|
| -S OMEGASTEP, --step=OMEGASTEP |
Step size in Omega when you have no header info
|
| -T OMEGA, --start=OMEGA |
Start position in Omega when you have no header info
|
| --ndigits=NDIGITS | Number of digits in file numbering [4] |
| -P PADDING, --padding=PADDING |
Is the image number to padded Y|N, e.g. should 1 be
0001 or just 1 in image name, default=Y |
| --OmegaFromHeader |
Read Omega values from headers [default]
|
| --OmegaOverRide |
Override Omega values from headers
|