220806 14:29:05 : Using the detector type "adsc" provided by the BCM
220806 14:29:05 : Autoindexing first, second and both images - please wait...
220806 14:29:05 : XML: <?xml version="1.0" encoding="ISO-8859-1"?><index_request><fileinfo><directory>/scisoft/users/svensson/tmp/dataBenchmark/AV01-3342167Aa_1</directory><prefix>ref-AV01-3342167Aa</prefix><suffix>img</suffix><template>ref-AV01-3342167Aa_1_###.img</template><run_number>1</run_number></fileinfo><image>1</image><image>2</image><detector><type>adsc</type></detector></index_request>
220806 14:29:05 : Initialising data processing system ... 
220806 14:29:05 : Starting autoindex...
220806 14:29:07 : Screening recommended I/Sigma 20.000000
220806 14:29:07 : Pre-screened image 1 - status = ok
220806 14:29:10 : Screening recommended I/Sigma 20.000000
220806 14:29:10 : Pre-screened image 2 - status = ok
220806 14:29:24 : Reading stf file: /scisoft/users/svensson/tmp/dataBenchmark/AV01-3342167Aa_1/tmp/autoindex_1/mosflm.stf
220806 14:29:39 : Reading stf file: /scisoft/users/svensson/tmp/dataBenchmark/AV01-3342167Aa_1/tmp/autoindex_2/mosflm.stf
220806 14:30:01 : Reading stf file: /scisoft/users/svensson/tmp/dataBenchmark/AV01-3342167Aa_1/tmp/autoindex_all/mosflm.stf
220806 14:30:01 : Indexing results by indexing task
220806 14:30:01 : Status for all images: ok
220806 14:30:01 : Status for image 1: ok
220806 14:30:01 : Status for image 2: ok
220806 14:30:01 : Obtained DNA configuration
220806 14:30:01 : Begin interpretation
220806 14:30:01 : Refined solution 5 with C2221 symmetry imposed.
220806 14:30:01 : Initial cell (before refinement) is    92.992 126.804 105.627  90.000  90.000  90.000
220806 14:30:01 : Refined cell parameters:               92.999 126.765 105.632  90.000  90.000  90.000
220806 14:30:01 : Using 542 indexed reflections for refinement (out of 583 spots used in indexing)
220806 14:30:01 : Fraction rejected reflections in refinement / used reflections in indexing: 0.070
220806 14:30:01 : RMS spot deviation: 0.114
220806 14:30:01 : Beam coordinates has been shifted by  -0.005 -0.074
220806 14:30:01 : Mosaicity: 0.600
220806 14:30:01 : Comparing solutions from 2 and 1
220806 14:30:01 : Incompatible solutions for 2 and 1
220806 14:30:01 : Orientation matrices agree
220806 14:30:01 : Comparing unit cells between overall and image 1
220806 14:30:01 : Comparing unit cells between overall and image 2
220806 14:30:01 : Solutions incompatible between all images and image 2
220806 14:30:01 : Mosaic spreads varied by < 25%
220806 14:30:01 : Making jpeg images in /scisoft/users/svensson/tmp/dataBenchmark/AV01-3342167Aa_1/AV01-3342167Aa_1_dnafiles/index
220806 14:30:01 : Lattice: orthorhombic   Assumed pointgroup: PG222
220806 14:30:02 : XML: <?xml version="1.0" 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220806 14:30:02 : Indexing successful! Now proceeding to integration of images.
220806 14:30:02 : XML: <?xml version="1.0" encoding="ISO-8859-1"?><single_integrate_request><image>1</image><image>2</image><fileinfo><directory>/scisoft/users/svensson/tmp/dataBenchmark/AV01-3342167Aa_1</directory><prefix>ref-AV01-3342167Aa</prefix><suffix>img</suffix><template>ref-AV01-3342167Aa_1_###.img</template><run_number>1</run_number></fileinfo></single_integrate_request>
220806 14:30:02 : Starting single image integration...
220806 14:30:02 : Single integrating images:[1, 2]
220806 14:30:03 : Integrating image batch 1 to 1
220806 14:30:04 : Processing image 1
220806 14:30:06 : Reading stf file: /scisoft/users/svensson/tmp/dataBenchmark/AV01-3342167Aa_1/tmp/integrate_1/mosflm.stf
220806 14:30:06 : Error found! Integration failure in Mosflm: __count__:1subroutine:{1: 'MOSFLM'}mark:{1: '4'}
220806 14:30:06 : Finished integrating batch 1 to 1
220806 14:30:06 : Copying log files to /scisoft/users/svensson/tmp/dataBenchmark/AV01-3342167Aa_1/AV01-3342167Aa_1_dnafiles
220806 14:30:06 : Integrating image batch 2 to 2
220806 14:30:07 : Processing image 2
220806 14:30:09 : Reading stf file: /scisoft/users/svensson/tmp/dataBenchmark/AV01-3342167Aa_1/tmp/integrate_2/mosflm.stf
220806 14:30:09 : Error found! Integration failure in Mosflm: __count__:1subroutine:{2: 'MOSFLM'}mark:{2: '4'}
220806 14:30:09 : Finished integrating batch 2 to 2
220806 14:30:09 : Copying log files to /scisoft/users/svensson/tmp/dataBenchmark/AV01-3342167Aa_1/AV01-3342167Aa_1_dnafiles
220806 14:30:09 : Error integrating reference images!
220806 14:30:09 : XML: <?xml version="1.0" encoding="ISO-8859-1"?><integrate_response><status><code>error</code><message>Integration failure in Mosflm: __count__:1subroutine:{1: 'MOSFLM'}mark:{1: '4'}</message></status></integrate_response>
220806 14:30:09 : ERROR after integration of reference images: Integration failure in Mosflm: __count__:1subroutine:{1: 'MOSFLM'}mark:{1: '4'}
220806 14:30:09 : Screening results not stored in data base: No valid Data Collection Id
220806 14:30:09 : End of benchmark
220806 14:30:09 : Shutting down the ExecutiveSystem
220806 14:30:10 : Shutting down the DNA logger
