DNA XML examples

The following is the latest definition of the DNA project XML. Whilst not a formal definition when viewed in conjunction with the DTD it is hoped this will make it easier to understand the structure of the project's XML.

<collect_start>
  <data-set id = "1">
    <resolution="2.0">
    <exposure_time="1.5">
    <phi_start="0.0">
    <phi_end="30.0">
    <oscillation_range="1.0">
    <no_passes="1">
    [<slit>]
    <wavelength="0.978">
    <directory="/data/dna">
    <filename_template="steve_###.img">
    <first_image_number="1">
  </data_set>
</collect_start>

<collect_output>
  <status>
  <data_set_id>
  <error_message>
</collect_output>

<collect_end>
</collect_end>

<index_start>
  <project id1="ls1402"
           id2="run 4432"
           [id3,id4...]/>
  <fileinfo directory="/data/id14eh4/external/ls1402/se1/e1"
            filename_template="bfft_###.img" />
  <image no="001" [phi_start="0.0"]/>
  [<image no="031" [phi_start="6.0"]/>]
  [<image no="061" [phi_start="12.0"]/>]
  [<detector type="adsc"
             gain="1.0"
             x_pixelsize="0.0816"
             y_pixelsize="0.0816"/>]
  [<beamline divergence="0.001" polarisation="0.98" /> ]
  [<data_collection wavelength="0.8374"
                    distance="223.2"
                    phi_range="0.2"
                    x_beam="95.45"
                    y_beam="93.43"/>]
  [<cell a="74.4 b="38.2" c="38.6" alpha="90.0" beta="90.0" gamma="90.0"/>]
  [<symmetry  sym="p212121"/>]
</index_start>

<index_output program="mosflm" >
  <project id1="ls1402"
           id2="run 4432"
           [id3,id4...]/>
  <status flag = "ok" />
  <solution 
    no_reflections_used = "2342"
    no_reflections_rejected = "123"
    rms_spot_deviation = "0.234"
    x_beam_updated = "95.55"
    y_beam_updated = "93.23"
    laue_group = "P"
   [penalty = "10.0"]/> 
   [<symmetry sym="p212121" />]
    <cell a="74.4 b="38.2" c="38.6" alpha="90.0" beta="90.0" gamma="90.0"/>
    <orientation_matrix type="amat" program="mosflm" e11="0.00328538" .../> 
  />
</index_output>

<characterise_crystal>
  <id = "ls1402">
  <symmetry sym="p212121" />
  <resolution="2.0">
</characterise_crystal>

<expert_result>
  <status flag="ok|warning|error">
    The indexing succeeded with results x, y, z.
  </status>
</expert_result>

<beamline_params>
  <phi_now="0.0">
  <wavelength="0.978">
  <distance="250.0">
  <beam_info>
  <slits>
</beamline_params>

<dc_params>
  <exposure_time="1.5">
  <oscillation_range="1.0">
  <no_passes="1">
  <project_id="1">
</dc_params>

<file_info>
  <directory="/data/dna">
  <filename_template="steve_###.img">
</file_info>

<dp_result>
  <status flag="ok|warning|error">
    Data processing failed : image not found.
  </status>
</dp_result>

<abort/>

Last Updated: 7th-December-2001 by Steve Kinder