images_prefix             =  "data/Calcite_170K_1_0"

# Let the following images_prefix_alt to None and dont set it ( default None)
# It is used for reviewing with comparison of same position locations
# versus an alternative dataset
#  images_prefix_alt         =  "G19K45/set1_0001p_"
images_postfix        =  ".cbf"

## peaks are searched, having a radius peak_size
#  and with maximum > threshold_abs and > image_max*threshold_rel
threshold_abs=40000
threshold_rel=0.00
peak_size = 2
spot_view_size = 10

# Filtering, OPTIONAL or set it to None for no mask filtering of bad pixels
# filter_file           =  None  
filter_file           =  "data/filter.edf"  

##  medianize can be 1 or 0 ( True or False)
##  The peak is always searched into a stack
##  of spot_view_size + 1 + spot_view_size slices
##  When the option is activated each slice will be beforehand
##  subtracted with the median of the  slices going from the spot_view_size^th preceeding
##  to the spot_view_size^th following. Spot_view_size should be greaer than peak_size
medianize = 1


## Let this advanced option as it is for now, or dive into the code.
## The rationale here would be that in the first step on works
## locally on spot_view_size + 1 + spot_view_size slices,
##  in the second step one can work globally on the found peaks
globalize = (0,0)

## The file where  found peaks are written 
## or, when reviewing, read. 
file_maxima = "maxima.p"

### if yes, a graphical window allows for the selection of the mask
### Closing the window will propose to write on newmask.edf
drawmask = False

## Allows to have a simultaneous and animated view of the blobs.
## Animated thumnails.
## They can be selected of deselected. When clicking on the
## thumbnails a larger 3D explorer is charged with
## a (review_size+1+review_size )^3 stack
review = False
review_size = 50